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Τρίτη 21 Ιανουαρίου 2020

ARTICLES


Marian Ludgate—the scientist and her festschrift
International journal of basic and clinical endocrinology
2m
A Systematic Review of Programs to Promote Aspects of Teen Parents’ Self-sufficiency: Supporting Educational Outcomes and Healthy Birth Spacing
Abstract Introduction Expectant and parenting teens experience many challenges to achieving self-sufficiency and promoting their children’s healthy development. Teen parents need support to help them address these challenges, and many different types of programs aim to support them. In this systematic review, we examine the research about programs that aim to support aspects of teen parents’ self-sufficiency by promoting their educational...
Latest Results for Maternal and Child Health Journal
1h
'This is our liver patient...: use of narratives during resident and nurse handoff conversations
ObjectiveHandoffs are often framed as the co-construction of a shared understanding relying on narrative storytelling. We investigated how narratives are constructed and used during resident and nurse handoff conversations. MethodWe audio-recorded resident (n=149) and nurse (n=126) handoffs in an inpatient medicine unit. Qualitative analysis using grounded theory was conducted to identify and characterise the structure of resident and nursing handoff narratives. ResultsHandoff conversations among...
BMJ Quality & Safety current issue
1h
Novel tools for a learning health system: a combined difference-in-difference/regression discontinuity approach to evaluate effectiveness of a readmission reduction initiative
Current methods used to evaluate the effects of healthcare improvement efforts have limitations. Designs with strong causal inference—such as individual patient or cluster randomisation—can be inappropriate and infeasible to use in single-centre settings. Simpler designs—such as prepost studies—are unable to infer causal relationships between improvement interventions and outcomes of interest, often leading to spurious conclusions regarding programme success. Other designs, such as regression discontinuity...
BMJ Quality & Safety current issue
1h
The ageing surgeon
IntroductionWe all grow old. Even surgeons. We slow down, we weaken and our skills diminish. Although individuals differ and chronological age may not be an accurate guide to biological age, we cannot hold back the advancing years. How long should we allow surgeons to keep operating? If public safety is the priority, as it must be, should there be a mandatory retirement age, as there is for pilots in the airline industry? Or is there a fair and equitable way of assessing those nearing the end of...
BMJ Quality & Safety current issue
1h
Measuring low-value care: learning from the US experience measuring quality
There is wide recognition that promoting healthcare value involves decreasing ‘low-value’ services—care without clinical benefit, little benefit compared with cost or disproportionate potential harm.1 While low-value care has been presumed to be a problem predominantly in the USA in the context of an expensive, fragmented, multipayer, fee-for-service system, recent evidence suggests low-value services are pervasive even in government-funded healthcare systems with universal coverage and interoperability.2...
BMJ Quality & Safety current issue
1h
Methods for scaling simulation-based teamwork training
Effective teamwork and communication is now recognised as a critical component of safe and high-quality patient care. Researchers, policymakers and frontline providers are in search of strategies to improve teamwork in healthcare. The most frequently used strategy is teamwork training.1 Teamwork training involves a systematic process in which a team is guided (often by facilitators) to improve and master different skills for working together effectively. Single-centre teamwork training initiatives...
BMJ Quality & Safety current issue
1h
Mind the gap: how vulnerable patients fall through the cracks of cancer quality metrics
In USA, cancer outcomes have steadily improved but considerable disparities in outcomes persist.1 There is continued evidence that vulnerable patients (ie, those who are socially or economically disadvantaged) are less likely to receive high-quality care and subsequently have poorer outcomes.2 Since the release of the Institute of Medicine’s report Ensuring Quality Cancer Care in 1999, increased attention has been paid to the importance of measuring cancer care quality, understanding its effects...
BMJ Quality & Safety current issue
1h
Failure to administer recommended chemotherapy: acceptable variation or cancer care quality blind spot?
BackgroundChemotherapy quality measures consider hospitals compliant when chemotherapy is recommended, even if it is not received. This may mask shortcomings in cancer care delivery. Objectives of this study were to (1) identify patient factors associated with failure to receive recommended chemotherapy without a documented contraindication and (2) assess hospital variation in failure to administer recommended chemotherapy. MethodsPatients from 2005 to 2015 with breast, colon and lung cancers who...
BMJ Quality & Safety current issue
1h
Medication-related harm in older adults following hospital discharge: development and validation of a prediction tool
ObjectivesTo develop and validate a tool to predict the risk of an older adult experiencing medication-related harm (MRH) requiring healthcare use following hospital discharge. Design, setting, participantsMulticentre, prospective cohort study recruiting older adults (≥65 years) discharged from five UK teaching hospitals between 2013 and 2015. Primary outcome measureParticipants were followed up for 8 weeks in the community by senior pharmacists to identify MRH (adverse drug reactions, harm from...
BMJ Quality & Safety current issue
1h
The ageing surgeon: a qualitative study of expert opinions on assuring performance and supporting safe career transitions among older surgeons
BackgroundUnlike some other safety critical professions, there is no mandatory age of retirement for doctors, including surgeons. Medical regulators in Australia are implementing additional checks on doctors from the age of 70. We describe expert opinions on assuring performance and supporting career transitions among older surgeons. MethodsIn this qualitative study, experts in four countries were purposively selected for their expertise in surgical governance. Experts responded to interviews (Australia,...
BMJ Quality & Safety current issue
1h
Preventing Clostridioides difficile infection in hospitals: what is the endgame?
Clostridioides difficile infection (CDI) remains an important healthcare-associated infection and threat to patient safety since the height of the NAP1/027 epidemic in the early part of the millennium. In 2011, C. difficile caused almost half a million infections and 29 000 deaths in the USA alone, with 24% of those cases occurring in hospital settings.1 The US Centres for Disease Control identifies C. difficile as one of three pathogens that poses ‘an immediate antibiotic resistance threat that...
BMJ Quality & Safety current issue
1h
Effect of hands-on interprofessional simulation training for local emergencies in Scotland: the THISTLE stepped-wedge design randomised controlled trial
ObjectiveTo assess whether the implementation of an intrapartum training package (PROMPT (PRactical Obstetric Multi-Professional Training)) across a health service reduced the proportion of term babies born with Apgar score <7 at 5 min (<75mins). DesignStepped-wedge cluster randomised controlled trial. SettingTwelve randomised maternity units with ≥900 births/year in Scotland. Three additional units were included in a supplementary analysis to assess the effect across Scotland. The intervention...
BMJ Quality & Safety current issue
1h
Obstetric care navigation: results of a quality improvement project to provide accompaniment to women for facility-based maternity care in rural Guatemala
BackgroundMany maternal and perinatal deaths in low-resource settings are preventable. Inadequate access to timely, quality care in maternity facilities drives poor outcomes, especially where women deliver at home with traditional birth attendants (TBA). Yet few solutions exist to support TBA-initiated referrals or address reasons patients frequently refuse facility care, such as disrespectful and abusive treatment. We hypothesised that deploying accompaniers—obstetric care navigators (OCN)—trained...
BMJ Quality & Safety current issue
1h
GSE126957 The regeneration transcriptome of corticospinal neurons
Contributors : Gunnar H Poplawski ; Riki Kawaguchi ; Giovanni Coppola ; Mark TuszynskiSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusIn the present study, we identify transcriptional mechanisms associated with corticospinal regeneration. We took advantage of the ability of NPC grafts to support corticospinal regeneration, together with a genetic mouse model (Glt25d2-GFP-L10a mice, in which a bacterial artificial chromosome (BAC) codes for GFP-tagged polyribosomes...
New GEO Series
1h
GSE129032 Genome-wide study the fruit ripening associated lncRNAs in strawberry
Contributors : Yajun Tang ; Dong WangSeries Type : Expression profiling by high throughput sequencingOrganism : Fragaria vescaWith the development of high throughput sequencing technologies, plenty of non-coding RNAs (ncRNAs) have been discovered to play important roles in diverse plant biological processes. Although these ncRNAs extensively exist in plant, their biological functions are still remained to characterize. To obtain a comprehensive understanding of long non-coding RNA (lncRNA) function...
New GEO Series
1h
GSE136722 Distinct Transcriptomic Profile of Monocyte-Derived Macrophages in Response to Escherichia Coli: When Genetics Rules
Contributors : Emam Mehdi ; Mallard Bonnie ; Juan F Medrano ; Angela CanovasSeries Type : Expression profiling by high throughput sequencingOrganism : Bos taurusThe proinflammatory response of Monocyte-Derived Macrophages is controlled by host genetics
New GEO Series
2h
GSE132715 Mouse Homolog of a Human TP53 Germline Mutation Reveals a Lipolytic Activity of p53
Contributors : Ju-Gyeong Kang ; Ji-Eun Lee ; Kai Ge ; Paul M HwangSeries Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThe physiological effects of the many germline mutations of TP53, encoding the tumor suppressor protein p53, are poorly understood. Here, we report generating a p53 R178C knockin mouse modeling the human TP53 R181C mutation that is notable for its prevalence and prior molecular...
New GEO Series
2h
GSE143945 Aryl hydrocarbon receptor mediates larval zebrafish fin duplication following exposure to benzofluoranthenes.
Contributors : Michael A Garland ; Mitra C Geier ; Sean M Bugel ; Cheryl L Dunham ; Joseph M Brown ; Susan C Tilton ; Robyn L TanguaySeries Type : Expression profiling by high throughput sequencingOrganism : Danio rerioPolycyclic aromatic hydrocarbons (PAHs) typically alter gene expression by acting through the aryl hydrocarbon receptor (AHR). In a previous phenotypic screen of over 120 PAHs, we identified four PAHs that induce an ectopic caudal fin (called X-fin) in larval zebrafish: benzo[k]fluoranthene...
New GEO Series
2h
GSE143952 Conjunctival and mucosal melanoma
Contributors : Lauge H Mikkelsen ; Steffen HeegaardSeries Type : Expression profiling by arrayOrganism : Homo sapiensNanoString data on 12 conjunctival melanomas and mucosal melanomaThe objective was to compare conjunctival melanoma with other mucosal melanomas at the RNA level using NanoString expression analysis of FFPE material.
New GEO Series
2h
GSE143943 Post-sepsis immunosuppression depends on NKT cell regulation of mTOR/IFN-gamma in NK cells
Contributors : Edy Y Kim ; Hadas Ner-Gaon ; Aidan M Cullen ; Jingyu Guo ; Jiyoung Choi ; Tomoyoshi Tamura ; Tal Shay ; Michael B BrennerSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusWe show a new immunosuppressive function for NKT cells, and the NKT cell-mTOR axis may be a therapeutic target to prevent post-sepsis immunosuppression
New GEO Series
2h
GSE130197 Next Generation Sequencing Facilitates Quantitative Analysis of treated and untreated mortical neurons GDE
Contributors : Kaitlyn Liu ; Gregory Brent ; Jainrong LiSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusTraumatic Brain Injury (TBI) is associated with disruption of cerebral blood flow leading to localized brain hypoxia. Thyroid hormone (TH) treatment, when administered shortly after injury, has been shown to promote neural protection in rodent TBI models. The mechanism of TH protection, however, is not established. We used mouse primary cortical neurons...
New GEO Series
2h
GSE143941 Classification of Primary Liver Cancer with Immunosuppression Mechanisms and Correlation with Genomic Alterations
Contributors : Shinji Tanaka ; Hidewaki NakagawaSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensBackground: The tumor microenvironment can be classified into immunologically active “inflamed” tumors and inactive “non-inflamed” tumors based on the infiltration of cytotoxic immune cells. Previous studies on liver cancer have reported a superior prognosis for inflamed tumors compared to non-inflamed tumors. However, liver cancer is highly heterogeneous immunologically...
New GEO Series
2h
GSE139273 Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells
Contributors : Alec R Nickolls ; Michelle M Lee ; David F Espinoza ; Marcin Szczot ; Ruby Lam ; Qi Wang ; Jeanette Beers ; Jizhong Zou ; Minh Q Nguyen ; Hans J Solinski ; Aisha A AlJanahi ; Kory R Johnson ; Michael E Ward ; Alexander T Chesler ; Carsten G BönnemannSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensIn vitro generation of human peripheral sensory neurons may provide a framework for novel drug screening platforms and disease models of touch and...
New GEO Series
2h
GSE143935 miRNA expression profiling in thephysiological cardiac hypertrophy of rats
Contributors : Jun Zhang ; Jie QiSeries Type : Non-coding RNA profiling by arrayOrganism : Rattus norvegicusUsing the highly sensitive miRNA array, we screened 220 microRNAs abundant in physiological left ventricular hypertrophy (LVH) and we explored the functions of these miRNAs in the cardiac tissue by Gene Ontology and Kyoto Encyclopedia of Genes annotation. miRNAs showed a high score in the pathway enriched in autophagy. Moreover, the expression levels of miR-26b-5p, miR-204-5p, and miR-497-3p...
New GEO Series
2h
GSE131876 The miR-146 family connects stem cell identity with cellular metabolism and pharmacological resistance in breast cancer
Contributors : Chiara Tordonato ; Matteo J Marzi ; Pier P Di Fiore ; Francesco NicassioSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensAlthough ectopic overexpression of miRNAs can influence mammary normal and cancer stem cells (SCs/CSCs), their physiological relevance remains uncertain. Here, we found that the miR-146 family is linked to SC identity, since: i) their expression is very high in SCs/CSCs from human/mouse primary mammary tissues; correlates with...
New GEO Series
2h
GSE143934 The response to the growth inhibitory activity of bone morphogenetic protein 4 in human glioblastoma cell lines is heterogeneous and dependent on SOX2
Contributors : Erika Dalmo ; Patrik Johansson ; Maria Niklasson ; Ida Gustavsson ; Sven Nelander ; Bengt WestermarkSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiensGlioblastoma multiforme (GBM) continues to have a dismal prognosis. Even though detailed information on the genetic aberrations in cell signaling and cell cycle checkpoint control is available, no effective targeted treatment has been developed. Despite the advanced molecular defects, glioblastoma...
New GEO Series
2h
GSE93897 Preclinical Evaluation of Dual mTOR inhibitor, AZD2014, and Castration in Prostate Cancer
Contributors : Sandi Chiranjeevi ; Messie Charlie ; Antonio Ramos-Montoya ; Sérgio L Felisbino ; Davies Barry ; Pacey SimonSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusPurpose: RNA sequence analysis identified active proliferation of T cells in the combination therapyMethods: Pten-null tumours were collected 4 hours after the last dose (18th day). Total RNA from tumor samples was isolated using the Allprep kit (Qiagen, Germany). The quantity of the RNA...
New GEO Series
2h
GSE80393 Transcriptomic analysis of neuroblastoma SH-SY5Y cells in response to stable over-expression of neuroblastoma highly expressed 1 (NHEG1)
Contributors : Qiangsong Tong ; Liduan ZhengSeries Type : Expression profiling by arrayOrganism : Homo sapiensNeuroblastoma (NB), a malignant embryonic tumor arising from primitive neural crest cells, accounts for more than 7% of malignancies and around 15% of cancer-related mortality in childhood. Better elucidating the mechanisms of tumorigenesis and aggressiveness is important for improving the therapeutic efficiencies of NB. Through mining public microarray and RNA sequencing datasets, we identified...
New GEO Series
5h
GSE143922 Exogenous melatonin promotes rice seed germination under salinity through regulating reactive oxygen species and phytohormones
Contributor : Liexiang HuangfuSeries Type : Expression profiling by high throughput sequencingOrganism : Oryza sativaMelatonin plays a potential role in multiple plant developmental processes and stress response. However, there are no reports regarding exogenous melatonin promoting rice seed germination under salinity and nor about the underlying molecular mechanisms at genome-wide. Here, we revealed that exogenous application of melatonin conferred roles in promoting rice seed germination under...
New GEO Series
5h
GSE137068 Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes [RNA-seq/ATAC-seq]
Contributor : Christopher K GlassSeries Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThe lung is inhabited by resident alveolar and interstitial macrophages as well as monocytic cells that survey the lung. Each cell type plays distinct functional roles under homeostatic and inflammatory conditions, but mechanisms establishing their molecular identities and functional potential remain poorly understood....
New GEO Series
8h
GSE136916 Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes
Series Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThis SuperSeries is composed of the SubSeries listed below.
New GEO Series
8h
GSE136915 Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes [scRNA-seq]
Contributors : Eniko Sajti ; Verena M Link ; Zhengyu Ouyang ; Nathanael J Spann ; Emma Westin ; Casey E Romanoski ; Gregory J Fonseca ; Lawrence S Prince ; Christopher K GlassSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusThe lung is inhabited by resident alveolar and interstitial macrophages as well as monocytic cells that survey the lung. Each cell type plays distinct functional roles under homeostatic and inflammatory conditions, but mechanisms establishing...
New GEO Series
8h
GSE136914 Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes [RNA-seq]
Contributors : Eniko Sajti ; Verena M Link ; Zhengyu Ouyang ; Nathanael J Spann ; Emma Westin ; Casey E Romanoski ; Gregory J Fonseca ; Lawrence S Prince ; Christopher K GlassSeries Type : Expression profiling by high throughput sequencingOrganism : Mus musculusThe lung is inhabited by resident alveolar and interstitial macrophages as well as monocytic cells that survey the lung. Each cell type plays distinct functional roles under homeostatic and inflammatory conditions, but mechanisms establishing...
New GEO Series
8h
GSE128959 Molecular changes during progression from early stage to advanced urothelial carcinoma
Contributor : Gottfrid SjödahlSeries Type : Expression profiling by arrayOrganism : Homo sapiensIt is unclear how urothelial carcinoma of the urinary bladder change, genetically and phenotypically, as patients progress from recurrent non muscle-invasive (NMI) to muscle-invasive (MI) disease or disease that require radical cystectomy. This data set contains gene expression data from 200 samples in a longitudinal study of such patients. Overlap with previously GEO-published cohorts from our lab is...
New GEO Series
10h
GSE126703 Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility
Series Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencing ; Methylation profiling by high throughput sequencingOrganism : Danio rerioThis SuperSeries is composed of the SubSeries listed below.
New GEO Series
11h
GSE126701 Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (RNA-seq)
Contributors : Hyung Joo Lee ; Ting Wang ; Stephen L JohnsonSeries Type : Expression profiling by high throughput sequencingOrganism : Danio rerioBackground: Zebrafish can faithfully regenerate injured fins through the formation of a blastema, a mass of proliferative cells that can grow and develop into the lost body part. After amputation, various cell types contribute to blastema formation, where each cell type retains fate restriction and exclusively contributes to regeneration of its own lineage....
New GEO Series
11h
GSE126702 Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (WGBS)
Contributors : Hyung Joo Lee ; Ting Wang ; Stephen L JohnsonSeries Type : Methylation profiling by high throughput sequencingOrganism : Danio rerioBackground: Zebrafish can faithfully regenerate injured fins through the formation of a blastema, a mass of proliferative cells that can grow and develop into the lost body part. After amputation, various cell types contribute to blastema formation, where each cell type retains fate restriction and exclusively contributes to regeneration of its own lineage....
New GEO Series
11h
GSE126700 Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (ATAC-seq)
Contributors : Hyung Joo Lee ; Ting Wang ; Stephen L JohnsonSeries Type : Genome binding/occupancy profiling by high throughput sequencingOrganism : Danio rerioBackground: Zebrafish can faithfully regenerate injured fins through the formation of a blastema, a mass of proliferative cells that can grow and develop into the lost body part. After amputation, various cell types contribute to blastema formation, where each cell type retains fate restriction and exclusively contributes to regeneration...
New GEO Series
11h

GSE134465 Gene Network Transitions in Embryos Depend Upon Interactions between a Pioneer Transcription Factor and Core Histones
Series Type : Expression profiling by high throughput sequencing ; Genome binding/occupancy profiling by high throughput sequencingOrganism : Mus musculusThis SuperSeries is composed of the SubSeries listed below.
New GEO Series
12h
GSE141011 DNA Double Strand Break Repair in E. coli Perturbs Cell Division and Chromosome Dynamics
Contributors : Martin A White ; Elise Darmon ; Manuel A Lopez-Vernaza ; David LeachSeries Type : OtherOrganism : Escherichia coli K-12The effect of a site-specific DNA double-strand break on the abundance of E. coli chromosomal DNA during exponential growth was investigated by marker frequency analysis (MFA).
New GEO Series
15h
GSE136717 An advanced intestinal tissue model reveals host and pathogen strategies during Salmonella infection
Contributors : Leon N Schulte ; Marco Metzger ; Jörg VogelSeries Type : Expression profiling by high throughput sequencingOrganism : Homo sapiens ; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344Here, we introduce an intestinal tissue model to study human enteric infections. Our model comprises epithelial and endothelial layers, a primary intestinal collagen scaffold, and immune cells. We use Dual RNA-seq to chart the communication amongst several different cell types at the...
New GEO Series
16h
GSE141045 Extracellular vesicle-microRNA transfer controls germinal center reaction and antibody production
Series Type : Non-coding RNA profiling by high throughput sequencingOrganism : Mus musculusIntercellular communication orchestrates effective immune responses against disease-causing agents. Extracellular vesicles (EVs) are potent mediators of cell-cell communication. EVs carry bioactive molecules, including microRNAs, which modulate gene expression and function in the recipient cell. Here, we show that formation of cognate primary T-B lymphocyte immune contacts promotes transfer to the B cell of...
New GEO Series
17h
GSE140982 microRNA repertoire of wild-type C57BL/6 mice T cell blasts and their secreted small extracellular vesicles (Evs)
Contributors : L Fernandez-Messina ; A Rodríguez-Galán ; V G García de Yébenes ; C Gutiérrez-Vázquez ; S Tenreiro ; A R Ramiro ; F Sanchez-MadridSeries Type : Non-coding RNA profiling by high throughput sequencingOrganism : Mus musculusT cell blasts were obtained from wild-type C57BL/6 mice. Six-day culture blast supernatants were ultracentrifuged for small EV obtention and small EV pellet obtained after from 100,000g ultracentrifugation and T cell blasts RNA were isolated for small RNA sequencing;...
New GEO Series
17h
GSE140981 microRNA expression changes in DICER-KO B cells after OVA-specific immune synapse formation
Contributors : L Fernandez-Messina ; A Rodríguez-Galán ; V G García de Yébenes ; C Gutiérrez-Vázquez ; S Tenreiro ; A R Ramiro ; F Sanchez-MadridSeries Type : Non-coding RNA profiling by high throughput sequencingOrganism : Mus musculusIntercellular communication orchestrates effective immune responses against disease-causing agents. Extracellular vesicles (EVs) are potent mediators of cell-cell communication. EVs carry bioactive molecules, including microRNAs, which modulate gene expression...
New GEO Series
17h
GSE124464 DNA methylation analysis in oropharyngeal cancer [450K array]
Contributors : Takuya Nakagawa ; Masaki Fukuyo ; Atsushi KanedaSeries Type : Methylation profiling by genome tiling arrayOrganism : Homo sapiensDNA methylation analysis in oropharyngeal squamous carcinoma (OPSCC) samples and oropharyngeal non-cancerous mucosa samples. Infinium HumanMethylation450 BeadChip was used to obtain DNA methylation profiles across 485,577 CpG sites. Total samples included 89 OPSCC samples and 5 non-cancerous mucosa samples.
New GEO Series
23h
GSE124633 DNA methylation analysis in oropharyngeal cancer
Series Type : Methylation profiling by genome tiling arrayOrganism : Homo sapiensThis SuperSeries is composed of the SubSeries listed below.
New GEO Series
23h
GSE124632 DNA methylation analysis in oropharyngeal cancer [EPIC array]
Contributors : Takuya Nakagawa ; Masaki Fukuyo ; Atsushi KanedaSeries Type : Methylation profiling by genome tiling arrayOrganism : Homo sapiensDNA methylation analysis in oropharyngeal squamous carcinoma (OPSCC) samples and oropharyngeal non-cancerous mucosa samples. Infinium MethylationEPIC BeadChip Kit was used to obtain DNA methylation profiles across more than 850,000 CpG sites. Total samples included 89 OPSCC samples and 5 non-cancerous mucosa samples.
New GEO Series
23h

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